If you are applying for a job at a company, there is no chance you are going to change their entire compensation strategy as a precondition to getting the job. So it's either engage Warrior mode and negotiate, or move on and interview somewhere else.

If you found a company, or in a position in your current company that upper management will listen to you, that's a better opportunity to switch to Magi mode and discuss how to change the entire compensation policy to something better for everyone involved.